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BIODIVERSITY DATA

FBIP: Genetic diversity of olive insect pests and their natural enemies in the Western Cape

Latest version published by South African National Biodiversity Institute on Dec 13, 2019 South African National Biodiversity Institute

Assess the occurrence and infestation rate of olive flies, olive beetles, olive lace bug and their parasitoids in wild and domestic olives in the Western Cape and to generate primary DNA sequence data. The data will include estimates of genetic diversity in olive flies, novel complete mitochondrial genomes and sequences for barcoding in six species.

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 2,294 records.

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 2,294 records in English (41 KB) - Update frequency: unknown
Metadata as an EML file download in English (9 KB)
Metadata as an RTF file download in English (8 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

van Asch B (2019): FBIP: Genetic diversity of olive insect pests and their natural enemies in the Western Cape. v1.0. South African National Biodiversity Institute. Dataset/Occurrence. http://ipt.sanbi.org.za/iptsanbi/resource?r=marais_hbsoc_2016_adm&v=1.0

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is South African National Biodiversity Institute. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 0081d6b8-9c38-49ee-8355-f5a118cc0876.  South African National Biodiversity Institute publishes this resource, and is itself registered in GBIF as a data publisher endorsed by South African Biodiversity Information Facility.

Keywords

Bactrocera; Argopistes; Plerochila australis; parasitoids wasps; Specimen

Contacts

Who created the resource:

Barbara van Asch
Senior Lecturer
Stellenbosch University Stellenbosch University, Department of Genetics, JC Smuts Building Room 224 7601 Stellenbosch University Western Cape ZA 0218085888
http://www.sun.ac.za/english/faculty/agri/genetics/staff-students/academic-staff

Who can answer questions about the resource:

Barbara van Asch
Senior Lecturer
Stellenbosch University Stellenbosch University, Department of Genetics, JC Smuts Building Room 224 7601 Stellenbosch University Western Cape ZA 0218085888
http://www.sun.ac.za/english/faculty/agri/genetics/staff-students/academic-staff

Who filled in the metadata:

Barbara van Asch
Senior Lecturer
Stellenbosch University Stellenbosch University, Department of Genetics, JC Smuts Building Room 224 7601 Stellenbosch University Western Cape ZA 0218085888
http://www.sun.ac.za/english/faculty/agri/genetics/staff-students/academic-staff

Who else was associated with the resource:

Content Provider
Mahlatse Kgatla
FBIP Data Specialist
SANBI 2 Cussonia Avenue, Brummeria 0184 Pretoria Gauteng ZA 0128435196
http://fbip.co.za/contact/

Geographic Coverage

Western Cape, Stellenbosch

Bounding Coordinates South West [-39.661, 7.77], North East [-33.202, 26.517]

Taxonomic Coverage

Olive Insects

Class  Insects

Temporal Coverage

Start Date / End Date 2015-03-06 / 2016-05-09

Project Data

Assess the occurrence and infestation rate of olive flies, olive beetles, olive lace bug and their parasitoids in wild and domestic olives in the Western Cape and to generate primary DNA sequence data. The data will include estimates of genetic diversity in olive flies, novel complete mitochondrial genomes and sequences for barcoding in six species.

Title Genetic diversity of olive insect pests and their natural enemies in the Western Cape
Identifier FBIS150603118644
Funding Foundational Biodiversity Information Programme
Study Area Description Western Cape, Stellenbosch

The personnel involved in the project:

Principal Investigator
Barbara van Asch

Sampling Methods

Whole animals where collected

Study Extent Western Cape, Stellenbosch

Method step description:

  1. We propose to survey the presence, estimate infestation rate in wild and domestic olives and assess the genetic diversity of B. oleae and B. bigutulla, Argopistes spp. (A. sexvitattus, A. capensis and A. oleae) and P. australis (olive flies, olive beetles and olive lace bug, respectively) in the Western Cape of South Africa. We will generate primary sequence data on complete mitochondrial genomes for one individual of each species, and cytochrome c oxidase I (COI, the reference barcoding DNA region) for 50 individuals of each species. Complete mitogenomes will be used to reconstruct phylogenetic trees of Bactrocera spp., the Galerucinae sub-family for Argopistes spp. and the Tingidae family for Plerochila australis. Novel COI data will be generated and deposited in BOLD for barcoding purposes, accompanied by full taxonomic records. Complete mitogenomes, COI and mtDNA polymorphic regions will be used to assess intra-specific diversity in olive flies.

Additional Metadata

Alternative Identifiers http://ipt.sanbi.org.za/iptsanbi/resource?r=marais_hbsoc_2016_adm